2019 ScienceBase Release Notes

Bug

• [SCIENCEBASE-8048] - 'Browse by Location' Link off Homepage not Working
• [SCIENCEBASE-8117] - some thumbnails not showing (GET of thumbnail image returns blank doc)
• [SCIENCEBASE-8127] - Directory - Update org codes
• [SCIENCEBASE-8132] - Directory email and usernames should not be case-sensitive
• [SCIENCEBASE-8139] - FQA:test:'Browse by Location' Link off Homepage not Working- 8048

New Feature

• [SCIENCEBASE-8134] - fix uploadSession issues preventing users from uploading files
• [SCIENCEBASE-8140] - FQA:Test: Add permissions link to sidebar- 8083
• [SCIENCEBASE-8141] - resolve react-test-renderer issues

Task

• [SCIENCEBASE-7903] - Modify spring-security-keycloak plugin to use JWT authentication to directory
• [SCIENCEBASE-7949] - Create a mutation to create/update a items
• [SCIENCEBASE-7952] - Create a mutation for adding/updating metadata on an item
• [SCIENCEBASE-7958] - Create a GraphQL query/mutation for managing permissions
• [SCIENCEBASE-7959] - Create UI for viewing permissions
• [SCIENCEBASE-7964] - ScienceBase Directory Follow Up #2: Rewrite Update Rules for Changes from LDAP
• [SCIENCEBASE-7999] - Pull out shared functions in ItemRepository and FileRepository and put them in a shared file
• [SCIENCEBASE-8056] - Create action menu option and dialog on files to overlay scrape data on the item
• [SCIENCEBASE-8062] - Create overlayScrape mutation
• [SCIENCEBASE-8064] - Pull the ItemView component from search into ScienceBase Manager (files-ui)
• [SCIENCEBASE-8065] - Create getItem query that returns files with scrapeMetadata
• [SCIENCEBASE-8068] - Change post processing of files in catalog to handle s3 files
• [SCIENCEBASE-8074] - Redirect the user to SB manager when uploading large files to catalog
• [SCIENCEBASE-8101] - Update the UI/UX for SB manager
• [SCIENCEBASE-8103] - Add item
• [SCIENCEBASE-8104] - edit item
• [SCIENCEBASE-8106] - Connect SB Search to SB2 for demo
• [SCIENCEBASE-8107] - Need a common VizID between SB 2 and SB 3
• [SCIENCEBASE-8109] - FQA: Test: ScienceBase 8081, 8088
• [SCIENCEBASE-8110] - Directory - password reset not working on beta
• [SCIENCEBASE-8111] - Report a Problem - make email required
• [SCIENCEBASE-8113] - FQA: Test: SCIENCEBASE-8110 Directory - password reset not working on beta
• [SCIENCEBASE-8114] - FQA: Test: SCIENCEBASE-8093 ScienceBase Directory - help page "report a problem" not found
• [SCIENCEBASE-8119] - Create download URL for s3 files
• [SCIENCEBASE-8129] - fontawesome dependency is preventing the site from loading
• [SCIENCEBASE-8137] - AWS Training
• [SCIENCEBASE-8142] - FGQ:Test: Create UI for viewing permissions 7959

Improvement

• [SCIENCEBASE-8098] - Add 'Replace File' button on ScienceBase Edit>Files UI
• [SCIENCEBASE-8118] - Breadcrumbs, Title, Menus like SB2-Catalog

Bug

• [SCIENCEBASE-8039] - Issue with CSW Harvest Reported by BLM
• [SCIENCEBASE-8057] - ScienceBase: Directory: New user Sponsor not saving
• [SCIENCEBASE-8079] - ScienceBase by the Numbers
• [SCIENCEBASE-8086] - Sciencebase Directory Organization JSON 404 Error
• [SCIENCEBASE-8087] - No Space Left on Device Error on File Upload
• [SCIENCEBASE-8092] - ScienceBase Directory: Drop down hover menu color hides text
• [SCIENCEBASE-8093] - ScienceBase Directory - help page "report a problem" not found
• [SCIENCEBASE-8094] - BaseMap not Displaying in Search Results / Intermittently on Item Show Page
• [SCIENCEBASE-8099] - Resolve BASIS Relay Issue

New Feature

• [SCIENCEBASE-8003] - Create a graphql mutation for adding an item
• [SCIENCEBASE-8049] - Differentiate linked items from direct descendants in table
• [SCIENCEBASE-8081] - Mockup UI redesign with sidebar and top nav
• [SCIENCEBASE-8083] - Add permissions link to sidebar
• [SCIENCEBASE-8088] - Setup route for fileListTable

Story

• [SCIENCEBASE-7938] - As a user I can list and browse items and their files.
• [SCIENCEBASE-7942] - I can create an item
• [SCIENCEBASE-7944] - As a user I can add files to an item

Task

• [SCIENCEBASE-7770] - Update BASIS documentation
• [SCIENCEBASE-7836] - Update Metrics Documentation
• [SCIENCEBASE-7953] - Create the SQL query for updating an items metadata
• [SCIENCEBASE-7998] - Create FileRepository in sb-graphql
• [SCIENCEBASE-8011] - FQA: Test: SCIENCEBASE-7946, 7930, 7919, 7917, 7913, 7912, 7895, 7727, 7789, 7786, 7726, 7719, 7715
• [SCIENCEBASE-8019] - Review and Respond to ScienceBase Section 508 Review
• [SCIENCEBASE-8025] - Upgrade Vocab to Grails 3
• [SCIENCEBASE-8050] - Upgrade Directory to Grails 3 (Pt. 3)
• [SCIENCEBASE-8053] - Upload a file to an item through the new GraphQL API
• [SCIENCEBASE-8054] - Save scraped metadata from catalog in to files DB
• [SCIENCEBASE-8055] - Present scraped metadata to the user with choices
• [SCIENCEBASE-8063] - Try CSP functionality with login.gov again
• [SCIENCEBASE-8066] - Add Chris Skinner to 'NDC_Dashboard_Managers' role, Write script to deeply apply write permissions to the NDC collection
• [SCIENCEBASE-8067] - Add a search link to the navigation on the SB Management UI
• [SCIENCEBASE-8071] - Fix Basic Auth on grails 3 directory on beta
• [SCIENCEBASE-8072] - Fix Basic Auth on grails 3 directory on beta
• [SCIENCEBASE-8078] - Upgrade Vocab to Grails 3 (Pt 2 ST)
• [SCIENCEBASE-8082] - Refactor File access in catalog
• [SCIENCEBASE-8084] - FQA: Test: Sciencebase 8020 - Increase Limit for Results from SB Directory
• [SCIENCEBASE-8085] - FQA: Test: SCIENCEBASE-7946 - A user can follow a link to a specific item
• [SCIENCEBASE-8090] - FQA: Test: ScienceBase Directory Health Check (Beta)
• [SCIENCEBASE-8095] - research faster way to RM 2018 trash
• [SCIENCEBASE-8116] - Create action menu option and dialog on files to overlay scrape data on the item August Work

Bug

• [SCIENCEBASE-8010] - ScienceBase Notify is not working to add users to the PHP List
• [SCIENCEBASE-8036] - Large File upload giving an error

New Feature

• [SCIENCEBASE-8004] - Create a graphql query for getting an item

Task

• [SCIENCEBASE-7580] - Re-design the SB API graphic on Search UI
• [SCIENCEBASE-7898] - Modify role lookups in files-db-api to use jwt authentication to directory
• [SCIENCEBASE-7954] - Create a mutation to add files to an item
• [SCIENCEBASE-7955] - Create a SQL to add files to items
• [SCIENCEBASE-7956] - Rework folders as items
• [SCIENCEBASE-7982] - USDA email addresses have changed to @usda.gov
• [SCIENCEBASE-7996] - Create a manually triggered job in gitlab to prune docker hosts
• [SCIENCEBASE-8008] - Update User Agreement Language
• [SCIENCEBASE-8020] - Increase Limit for Results from SB Directory
• [SCIENCEBASE-8022] - Rework Breadcrumb to use FolderContext
• [SCIENCEBASE-8023] - Add field to catalog/items that returns a list of ancestor objects
• [SCIENCEBASE-8024] - Upgrade Directory to Grails 3 (Pt. 2)
• [SCIENCEBASE-8032] - Work with systems to stand up a Tomcat 9 node in CSAHC
• [SCIENCEBASE-8035] - Upload a file to an item through the new GraphQL API
• [SCIENCEBASE-8037] - Update list that drives 'Data Owner' in SDC Harvest Dialogue
• [SCIENCEBASE-8038] - Deploy latest sb-graphql and files-ui to staging
• [SCIENCEBASE-8058] - Upgrade Mongo in Dev July work
• [SCIENCEBASE-8059] - Upgrade Vocab to Grails 3 July work

Bug

• [SCIENCEBASE-7918] - KeyCloak Login page has a bad link for creating a new account
• [SCIENCEBASE-7978] - Troubleshoot Login.gov Issues in Keycloak Using Chrome
• [SCIENCEBASE-7997] - File inventory problems - counts are off
• [SCIENCEBASE-8007] - Bookmarklet not functional
• [SCIENCEBASE-8021] - Investigate and Resolve Issue with SB Notify

New Feature

• [SCIENCEBASE-8013] - (Pair) create tests/methods for getting and posting items to catalog from sb-graphql
• [SCIENCEBASE-8014] - (Pair) create tests/methods for getting and posting items to catalog from sb-graphql

Story

• [SCIENCEBASE-7930] - Item Details View
• [SCIENCEBASE-7946] - A user can follow a link to a specific item

Task

• [SCIENCEBASE-7734] - Apply life cycle management for s3 buckets to clear out defunct s3 uploads
• [SCIENCEBASE-7960] - Create SQL features for managing permissions
• [SCIENCEBASE-7984] - Update passwords for basisharvester and catalogservice
• [SCIENCEBASE-7987] - Josso Plugin for Grails 3
• [SCIENCEBASE-7988] - SB Commons
• [SCIENCEBASE-7989] - SB Palisade Plugin for Grails 3
• [SCIENCEBASE-7991] - Create the SQL query for inserting/updating items
• [SCIENCEBASE-8001] - myusgs-josso-helper plugin for Grails 3
• [SCIENCEBASE-8002] - sciencebase-metrics plugin for Grails 3
• [SCIENCEBASE-8005] - sciencebase-directory-client plugin for Grails 3
• [SCIENCEBASE-8006] - SB elastic plugin for Grails 3
• [SCIENCEBASE-8012] - sb-util - Grails 3 replacement for jdt-util plugin
• [SCIENCEBASE-8015] - Upgrade Directory to Grails 3
• [SCIENCEBASE-8017] - Eliminate Anti-Samy plugin use in Directory (use JSoup instead)
• [SCIENCEBASE-8033] - Upgrade Mongo June Work

Bug

• [SCIENCEBASE-7912] - Upload new folder giving an error and not creating
• [SCIENCEBASE-7913] - As a new user I cannot create "My file" folder
• [SCIENCEBASE-7917] - Files - When I get an error message it starts to duplicate
• [SCIENCEBASE-7919] - Files Move - Need an error message if it already exists at the new location
• [SCIENCEBASE-7979] - "Data Release - Under Revision" Tag Will not Save to Item

New Feature

• [SCIENCEBASE-7972] - SB Search: Support Query Against Informational Fields/Params that are not in the Core Item JSON

Task

• [SCIENCEBASE-7877] - Upgrade phpList to 3.3 or newer
• [SCIENCEBASE-7915] - Add jwt authentication to production directory
• [SCIENCEBASE-7927] - Create new "Item" model within GraphQL API
• [SCIENCEBASE-7939] - Create an all items graphql query
• [SCIENCEBASE-7940] - Datasource to query items
• [SCIENCEBASE-7941] - Bootstrap the database schema
• [SCIENCEBASE-7947] - Create a GraphQL query for getting a single item
• [SCIENCEBASE-7948] - Create the SQL query for getting a single item
• [SCIENCEBASE-7950] - Create and install database trigger(s) for maintaining audit history table(s)
• [SCIENCEBASE-7951] - Create the SQL query for inserting/updating items
• [SCIENCEBASE-7966] - Update Most Recent Round of Contractor Emails per AD Google Doc in ScienceBase Users
• [SCIENCEBASE-7973] - Update Deploy to use gitlab runners
• [SCIENCEBASE-7974] - ccmap@usgs,gov account is disabled
• [SCIENCEBASE-7985] - Update FS user's Username in ScienceBase
• [SCIENCEBASE-7992] - Create a mutation to add files to an item (May)
• [SCIENCEBASE-7995] - Upgrade Mongo in Dev May work
• [SCIENCEBASE-8040] - Item Details View after ACL upgrade

Bug

• [SCIENCEBASE-7774] - As a user I would like to create a folder within a folder
• [SCIENCEBASE-7826] - Logging in with a SB account with a + makes it so I cannot add a folder or file
• [SCIENCEBASE-7854] - Unable to Log Into ScienceBase (and, as result, SBDR app)
• [SCIENCEBASE-7859] - lastUpdatedBy is not getting updated (persisted)
• [SCIENCEBASE-7861] - ScienceBase Support Request throwing an error
• [SCIENCEBASE-7862] - "Failed to connect to Directory for roles" Error when throwing bad request status in authenticated controller action
• [SCIENCEBASE-7863] - java.io.IOException: Server returned HTTP response code: 401 for URL in security plugin
• [SCIENCEBASE-7908] - Files UI: File download is not working
• [SCIENCEBASE-7932] - Troubleshoot Connection with DOI Tool from SB UI
• [SCIENCEBASE-7933] - S3 Download Not Working

New Feature

• [SCIENCEBASE-7921] - SB3 Files, Items Model
• [SCIENCEBASE-7923] - Item Nav component (left-column)
• [SCIENCEBASE-7924] - Item actions menu (breadcrumbs)
• [SCIENCEBASE-7925] - itemList component
• [SCIENCEBASE-7926] - itemListTable component
• [SCIENCEBASE-7936] - research libraries to make editable components for item views

Story

• [SCIENCEBASE-7572] - As a user when they upload the file, it determines the content type and base file metadata
• [SCIENCEBASE-7641] - As a Files user I can see understandable error messages
• [SCIENCEBASE-7720] - As a data admin, I can create community's sub-folder and manage permissions

Task

• [SCIENCEBASE-7703] - Wire Virus check function into files DB API
• [SCIENCEBASE-7715] - UI: Create Community folder
• [SCIENCEBASE-7727] - GraphQL: Create ACL on Folder
• [SCIENCEBASE-7740] - FQA TEST -SCIENCEBASE-7641-As a Files user I can see understandable error messages
• [SCIENCEBASE-7741] - FQA Test -SCIENCEBASE-7571- A user can download a file that has been approved.
• [SCIENCEBASE-7801] - prod-mongodb is down to ~91GB free space
• [SCIENCEBASE-7817] - GraphQL: Add missing error handlers
• [SCIENCEBASE-7818] - Catch errors in files api and make them friendly
• [SCIENCEBASE-7856] - Set up production Login.gov endpoint and integrate with prod Keycloak
• [SCIENCEBASE-7858] - FQA TEST April
• [SCIENCEBASE-7860] - files-service: REST Services for sub-folders with Sub-Spaces/ACLs
• [SCIENCEBASE-7864] - Add keycloak authentication to directory
• [SCIENCEBASE-7865] - Improve Keycloak plugin in services
• [SCIENCEBASE-7866] - Update Most Recent Round of Contractor Emails per AD Google Doc in ScienceBase Users
• [SCIENCEBASE-7869] - Upgrade Keycloak on Production
• [SCIENCEBASE-7873] - Review Directory updates from LDap and create a summary for Drew
• [SCIENCEBASE-7895] - Delete a folder
• [SCIENCEBASE-7897] - UI overview
• [SCIENCEBASE-7900] - Create a basic Landing Page
• [SCIENCEBASE-7901] - Begin Items, etc
• [SCIENCEBASE-7902] - Actions need to be disabled instead of removed if they can't be done
• [SCIENCEBASE-7904] - Change header menu actions for the details view
• [SCIENCEBASE-7906] - ui/ux remove UI border for dropzone
• [SCIENCEBASE-7907] - Create gitlab-runners independent from kubernetes
• [SCIENCEBASE-7909] - Create ECR registry for fort/sciencebase images
• [SCIENCEBASE-7910] - Artifacts for implementing keycloak with WHB
• [SCIENCEBASE-7911] - File Status - wire the shield to the anti-virus so the color updates when the scan updates
• [SCIENCEBASE-7914] - Set up docker swarm ingress for routing to containers
• [SCIENCEBASE-7916] - Files - Remove available for download everywhere
• [SCIENCEBASE-7920] - files-service: REST Services for sub-folders with Sub-Spaces/ACLs
• [SCIENCEBASE-7928] - New Item Action
• [SCIENCEBASE-7937] - Upgrade Mongo in Dev April 1-12 sprint continued with SCIENCEBASE-7802
• [SCIENCEBASE-7965] - Upgrade Mongo in Dev April work
• [SCIENCEBASE-7969] - Create new "Item" model within GraphQL API- April work
• [SCIENCEBASE-7970] - Item Details View April work

Bug

• [SCIENCEBASE-7825] - Firefox only - File download from the main file page does not work
• [SCIENCEBASE-7838] - Publish/Edit DOI from ScienceBase Intermittently Failing
• [SCIENCEBASE-7844] - S3 files -upload is not working
• [SCIENCEBASE-7848] - JOSSO errors

New Feature

• [SCIENCEBASE-7804] - Implement New 'Add EROS Trusted Digital Respository Resource' for External Resource Type (Concept -Placeholder)
• [SCIENCEBASE-7852] - Delete Multiple files at once

Story

• [SCIENCEBASE-7571] - A user can download a file that has been approved.

Task

• [SCIENCEBASE-7634] - Back-end Processing: Virus check function
• [SCIENCEBASE-7719] - GraphQL: Display file querying metadata
• [SCIENCEBASE-7726] - UI: Create ACL on folder
• [SCIENCEBASE-7728] - files-service: Create Folder ACL entities (continued from Feb)
• [SCIENCEBASE-7738] - create roles for clamAV lambda functions
• [SCIENCEBASE-7786] - Action: Delete
• [SCIENCEBASE-7789] - Action: Move
• [SCIENCEBASE-7805] - Create Tests for Toaster
• [SCIENCEBASE-7815] - GraphQL and UI: Fix upload to using filesdb as source of truth
• [SCIENCEBASE-7816] - GraphQL and UI: Enable pagination in GraphQL and in our Table
• [SCIENCEBASE-7819] - Document cloud deploy process for all SBfiles components
• [SCIENCEBASE-7827] - Implement downloadable check when virus scan is complete
• [SCIENCEBASE-7837] - files-service: REST Services for Folder/Space/ALCs for REST ACLs
• [SCIENCEBASE-7839] - Deploy files-api to Dev-IS EC2 instance with docker
• [SCIENCEBASE-7840] - Set up TLS connection between Apache and files-api
• [SCIENCEBASE-7841] - move files-db-api to that EC2
• [SCIENCEBASE-7842] - Orchestrate across multiple instances
• [SCIENCEBASE-7845] - Files UI: Allow a user to refresh the pathlisting/details view without refreshing the page
• [SCIENCEBASE-7850] - Files UI: Add pagination variables to the query in the url to allow for sharable links/hard refresh functionality
• [SCIENCEBASE-7855] - Move files-db-api to the same hosts as the other apps
• [SCIENCEBASE-7857] - Kubernetes troubleshooting
• [SCIENCEBASE-7867] - files-service: REST Services for sub-folders with Sub-Spaces/ACLs
• [SCIENCEBASE-7868] - GraphQL: Create ACL on Folder March work

Edit/Copy Release Notes

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** Bug

* [SCIENCEBASE-7772] - Directory: USGS Auto import on initial login recieving error
* [SCIENCEBASE-7812] - Unable able to click on files on Staging

** Task
* [SCIENCEBASE-7495] - catalog files from s3 object created events
* [SCIENCEBASE-7642] - Front-end: Display a catchall error message handler for the user
* [SCIENCEBASE-7711] - Improvements to file-db-api REST services to better handle and prevent data errors
* [SCIENCEBASE-7746] - Update passwords for basisharvester and catalogservice
* [SCIENCEBASE-7758] - Content table row component
* [SCIENCEBASE-7759] - Action Menu component
* [SCIENCEBASE-7760] - Pagination component
* [SCIENCEBASE-7761] - Badge component
* [SCIENCEBASE-7762] - Toaster Component
* [SCIENCEBASE-7769] - Investigate heap dump from Dec 13
* [SCIENCEBASE-7777] - Breadcrumb Component Cont
* [SCIENCEBASE-7782] - Create Icon component
* [SCIENCEBASE-7784] - GraphQL: Initial refactor to use files-db as source of truth
* [SCIENCEBASE-7785] - Human Readable Details
* [SCIENCEBASE-7787] - Action: Download
* [SCIENCEBASE-7788] - Action: Details
* [SCIENCEBASE-7791] - dialog box for delete
* [SCIENCEBASE-7792] - Dialog box for Move
* [SCIENCEBASE-7793] - Dialog box for share
* [SCIENCEBASE-7794] - connect lambda to right bucket
* [SCIENCEBASE-7795] - send file MD to files-api
* [SCIENCEBASE-7798] - Action: Upload
* [SCIENCEBASE-7800] - Create automated process to keep user role views up-to-date
* [SCIENCEBASE-7803] - UI: Number of files to display component
* [SCIENCEBASE-7806] - Extended characters in ScienceBase not being displayed properly in Drupal site
* [SCIENCEBASE-7808] - Change password for Service Account for Directory as it is expiring
* [SCIENCEBASE-7809] - FQA TEST - Feb staging tickets
* [SCIENCEBASE-7814] - GraphQL and UI: Complete refactor to using filesdb as source of truth
* [SCIENCEBASE-7829] - GraphQL: Display file querying metadata
* [SCIENCEBASE-7830] - Action: Delete
* [SCIENCEBASE-7831] - GraphQL and UI: Enable pagination in GraphQL and in our Table
* [SCIENCEBASE-7832] - GraphQL and UI: Fix upload to using filesdb as source of truth
* [SCIENCEBASE-7833] - files-service: Create Folder ACL entities

** Improvement
* [SCIENCEBASE-7666] - ISO transform changes to support layers and CQL queries in OGC services
* [SCIENCEBASE-7765] - update status mutation
* [SCIENCEBASE-7811] - Bucket list styling updates, modal for delete bucket
* [SCIENCEBASE-7821] - UI/UX - New Folder and New file needs a refresh when create
* [SCIENCEBASE-7822] - File Row Actions button
* [SCIENCEBASE-7823] - Folder actions menu button

Task
* [SCIENCEBASE-7687] - files-service: File-Metadata REST services
* [SCIENCEBASE-7693] - Create 2 Test Buckets on S3 for Black Pearl Testing
* [SCIENCEBASE-7731] - GraphQL: create community folder
* [SCIENCEBASE-7742] - change lambda trigger from S3 object creation to SQS message
* [SCIENCEBASE-7754] - Breadcrumb Component
* [SCIENCEBASE-7755] - Add Content component (+)
* [SCIENCEBASE-7757] - Content table header component
* [SCIENCEBASE-7796] - catalog files from s3 object created events