Confluence Retirement

In an effort to consolidate USGS hosted Wikis, myUSGS’ Confluence service is scheduled for retirement on January 27th, 2023. The official USGS Wiki and collaboration space is now SharePoint. Please migrate existing spaces and content to the SharePoint platform and remove it from Confluence at your earliest convenience. If you need any additional information or have any concerns about this change, please contact myusgs@usgs.gov. Thank you for your prompt attention to this matter.

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Contact us (Online form)      BioData Home - Image Removed     Retrieval - Image Removed    Input - Image Removed

Table of Contents for this page

Table of Contents

Can I use BioData? Is BioData Input for Me?

What this page is: What do I need to do to get set up to use the system? What does BioData support? What are it's limitations?

Who may be interested: Project chiefs and biologists who want to evaluate BioData for managing their project data

BioData is an Internet database application for managing, storing and distributing USGS aquatic bioassessment and monitoring data. It is available to any USGS scientist and provides national support for data input, editing, review, and storage. BioData supports community-level r fish, macroinvertebrates and algae samples and physical habitat data collected from streams and rivers.

BioData is....

  • An authoritative source of USGS data
  • An online data archive
  • Three applications – Input, Public Retrieval, Internal Retrieval
  • Accessed with a web browser and Internet connection

If you are interested in:

  • Managing your Project's data in BioData - Read on!
  • Entering data in an existing BioData Project - Contact us (Online form) and ask to have your UserID enabled

Checklist (tick)

Review this checklist to see if we can create a Project for you today! In the future we hope to support more sampling methods and site types.

  1. (tick) UserID enabled in the system
  2. (tick) NWIS stream sites
    1. All Samples must be at an NWIS site. BioData supports all NWIS sites with site type of Stream or Spring.
  3. (tick) Sampling methods/protocols
    1. Presently BioData supports samples collected with protocols of the USGS National Water Quality Assessment (NAWQA) program and the US EPA National Rivers and Streams (NRSA) program.
  4. (tick) Labs and Lab Procedures set up in the system
    1. We will work with labs to get them set up in the system

What's next?

Contact us (Online form) and tell us you are ready

Then what happens?

After you Contact Us....
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What will BioData do for me?

  • The latest version of your data will be in one place - protected in a secure, backed-up database housed at the EROS data center. 
  • You can enter and retrieve your data using a web browser from anywhere you have an internet connection
  • You can keep track of samples you send to the lab, and BioData will alert you when a lab uploads your data
  • BioData will make sure that labs deliver data using up-to-date taxonomic nomenclature
  • Your QA efforts will be more efficient, routine, and repeatable because BioData will automatically check your data - and will protect you from inadvertently releasing invalid data
  • You can decide who has rights to enter and edit your project data
  • Your cooperators and collaborators can retrieve your project data without your help.
  • You can save your data retrieval criteria for re-use - and even send it to someone else in an email so they can retrieve the same data set.
  • You won't have to archive spreadsheets, csv text files, or homegrown databases anymore. Your data will be preserved, curated and available to future generations - no extra effort required.
  • Your data will be put into a larger context as part of a large integrated data set of over 17,000 fish, macroinvertebrate, and algae samples collected from over 2,000 sites across the country.

To see these features (and more) in action - CONTACT US - the BioData Team will be happy to demonstrate them for you.

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Getting started checklist

(tick) I'm collecting bioassessment data involving one or more of the following: 1) macroinvertebrates, 2) algae, 3) fish, and/or 4) supporting habitat data from rivers and streams

(tick) I'm collecting samples at NWIS stream sites or I can create them...

(tick) I'm using sampling methods/protocols that BioData supports...

(tick) I'm using a lab that is set up in BioData with supporting procedures...

(tick)I have a UserID enabled in the BioData system.

(tick)Contact us and tell us you are ready

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Next Steps

The BioData team will...
  1. Give you login access by enabling you regular desktop UserID
  2. Create your project
  3. Work with you to get your lab set up to deliver data to BioData (this takes time)
You will...
  1. Complete your Project Profile
  2. Add staff to your project
  3. Start entering data

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